Transcript: lnc-FANCD2-1:7

Basic information

LNCipedia transcript ID: lnc-FANCD2-1:7 
LNCipedia gene ID: lnc-FANCD2-1
RefSeq ID: NR_103821
Location (hg38): chr3:9986893-10007004
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4696 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_103821.1
Alternative gene names: EMC3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 255.1379 coding 
CPAT coding probability 76.25% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FANCD2-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-BRK1-3:3
5.1 lnc-BRK1-3:3
5.2 lnc-FANCD2-1:7