Transcript: lnc-FAM91A1-1:1

Basic information

LNCipedia transcript ID: lnc-FAM91A1-1:1 
LNCipedia gene ID: lnc-FAM91A1-1
Ensembl Gene ID: ENSG00000253286
Ensembl Transcript ID: ENST00000518633
Location (hg38): chr8:123614225-123639644
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518633.1; CTD-2552K11.2-002; OTTHUMT00000381305.1; NONHSAT128563; ENST00000518633.5
Alternative gene names: ENSG00000253286.1; CTD-2552K11.2; OTTHUMG00000164986.1; ENSG00000253286.5; AC090193.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.7208 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM91A1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM91A1-1:1
4.0 lnc-FAM91A1-1:1
4.1 lnc-FAM91A1-1:1
5.0 lnc-FAM91A1-1:1
5.1 lnc-TRMT12-5:1
5.2 lnc-FAM91A1-1:1