Transcript: lnc-FAM84B-15:116
Basic information
LNCipedia transcript ID: lnc-FAM84B-15:116
LNCipedia gene ID: lnc-FAM84B-15
Location (hg38): chr8:127287510-127294728
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4161 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000246228.2|ENCT00000440299.1
Alternative gene names:
RNA sequence:
Structure:
Protein coding potential
| Metric |
Raw result |
Interpretation |
| PRIDE reprocessing 2.0 |
0 |
non-coding |
| Lee translation initiation sites |
|
non-coding |
| PhyloCSF score |
0.503 |
non-coding |
| CPAT coding probability |
0.60% |
non-coding |
| Bazzini small ORFs |
0 |
non-coding |
In stringent set:
yes
Locus conservation
| Locus conservation? |
 |
 |
 |
 |
| lnc-FAM84B-15:116 |
no
|
no
|
no
|
no
|
Available literature
-
Li
(2016),
Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells.,
Nucleic Acids Res.
-
Xie
(2016),
Long non-coding RNAs in colorectal cancer.,
Oncotarget
-
Al-Tassan
(2015),
A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.,
Sci Rep
-
Cabanski
(2015),
Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function.,
RNA Biol
-
Deng
(2015),
Long noncoding RNA CCAT1 promotes hepatocellular carcinoma progression by functioning as let-7 sponge.,
J. Exp. Clin. Cancer Res.
-
Hu
(2015),
Downregulation of NUF2 inhibits tumor growth and induces apoptosis by regulating lncRNA AF339813.,
Int J Clin Exp Pathol
-
Kim
(2015),
MYC-repressed long noncoding RNAs antagonize MYC-induced cell proliferation and cell cycle progression.,
Oncotarget
-
Ma
(2015),
Genetic variant in 8q24 is associated with prognosis for gastric cancer in a Chinese population.,
J. Gastroenterol. Hepatol.
-
Ma
(2015),
Long non-coding RNA CCAT1 promotes gallbladder cancer development via negative modulation of miRNA-218-5p.,
Cell Death Dis
-
Mizrahi
(2015),
Colon Cancer Associated Transcript-1 (CCAT1) Expression in Adenocarcinoma of the Stomach.,
J Cancer
-
Ruan
(2015),
Long non-coding RNA expression profile in atrial fibrillation.,
Int J Clin Exp Pathol
-
Ye
(2015),
Expression of lncRNA-CCAT1, E-cadherin and N-cadherin in colorectal cancer and its clinical significance.,
Int J Clin Exp Med
-
Zhai
(2015),
Long noncoding RNA MALAT1 as a putative biomarker of lymph node metastasis: a meta-analysis.,
Int J Clin Exp Med
-
Zhang
(2015),
Overexpression of long non-coding RNA CCAT1 is a novel biomarker of poor prognosis in patients with breast cancer.,
Int J Clin Exp Pathol
-
Zhou
(2015),
Identification of the long non-coding RNA H19 in plasma as a novel biomarker for diagnosis of gastric cancer.,
Sci Rep
-
Zhu
(2015),
CCAT1 promotes hepatocellular carcinoma cell proliferation and invasion.,
Int J Clin Exp Pathol
-
Dryden
(2014),
Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C.,
Genome Res.
-
He
(2014),
C-Myc-activated long noncoding RNA CCAT1 promotes colon cancer cell proliferation and invasion.,
Tumour Biol.
-
Kam
(2014),
Detection of a long non-coding RNA (CCAT1) in living cells and human adenocarcinoma of colon tissues using FIT-PNA molecular beacons.,
Cancer Lett.
-
Kim
(2014),
Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5.,
Proc. Natl. Acad. Sci. U.S.A.
-
Li
(2014),
Non-coding RNAs and gastric cancer.,
World J. Gastroenterol.
-
Xiang
(2014),
Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus.,
Cell Res.
-
Younger
(2014),
'Lnc'-ing enhancers to MYC regulation.,
Cell Res.
-
Alaiyan
(2013),
Differential expression of colon cancer associated transcript1 (CCAT1) along the colonic adenoma-carcinoma sequence.,
BMC Cancer
-
Liu
(2013),
Identification of differentially expressed long non-coding RNAs in human ovarian cancer cells with different metastatic potentials.,
Cancer Biol Med
-
Yang
(2013),
Long noncoding RNA CCAT1, which could be activated by c-Myc, promotes the progression of gastric carcinoma.,
J. Cancer Res. Clin. Oncol.
-
Jin
(2011),
Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk.,
Carcinogenesis
LNCipedia transcript ID history
| LNCipedia version |
LNCipedia transcript ID |
| 4.1 |
lnc-TMEM75-3:22 |
| 5.0 |
lnc-TMEM75-3:22 |
| 5.1 |
lnc-FAM84B-15:8 |
| 5.2 |
lnc-FAM84B-15:116 |