Transcript: lnc-FAM84B-15:106

Basic information

LNCipedia transcript ID: lnc-FAM84B-15:106 
HGNC Gene Symbol: lnc-FAM84B-15    
HGNC Full Gene Name: cancer susceptibility 19
Ensembl Gene ID: ENSG00000254166
Ensembl Transcript ID: ENST00000641794
Location (hg38): chr8:127078439-127082282
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 857 bp
Exons: 2
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641794.1
Alternative gene names: ENSG00000254166.2; CASC19


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -75.7031 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM84B-15:106 no no no no

Available literature

  1. Li (2016), Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells., Nucleic Acids Res.
  2. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  3. Al-Tassan (2015), A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer., Sci Rep
  4. Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
  5. Deng (2015), Long noncoding RNA CCAT1 promotes hepatocellular carcinoma progression by functioning as let-7 sponge., J. Exp. Clin. Cancer Res.
  6. Hu (2015), Downregulation of NUF2 inhibits tumor growth and induces apoptosis by regulating lncRNA AF339813., Int J Clin Exp Pathol
  7. Kim (2015), MYC-repressed long noncoding RNAs antagonize MYC-induced cell proliferation and cell cycle progression., Oncotarget
  8. Ma (2015), Genetic variant in 8q24 is associated with prognosis for gastric cancer in a Chinese population., J. Gastroenterol. Hepatol.
  9. Ma (2015), Long non-coding RNA CCAT1 promotes gallbladder cancer development via negative modulation of miRNA-218-5p., Cell Death Dis
  10. Mizrahi (2015), Colon Cancer Associated Transcript-1 (CCAT1) Expression in Adenocarcinoma of the Stomach., J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-FAM84B-15:106
5.1 lnc-FAM84B-15:106
5.2 lnc-FAM84B-15:106

loading