Transcript: lnc-FAM72A-7:1

Basic information

LNCipedia transcript ID: lnc-FAM72A-7:1 
LNCipedia gene ID: lnc-FAM72A-7
Location (hg38): chr1:206378864-206381599
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2178 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000450872.1; SRGAP2-AS1-001; OTTHUMT00000088497.1; NONHSAT009058
Alternative gene names: ENSG00000233501.1; SRGAP2-AS1; OTTHUMG00000036348.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.0406 non-coding 
CPAT coding probability 2.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM72A-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf147-1:1
4.0 SRGAP2-AS1:1
4.1 SRGAP2-AS1:1
5.0 SRGAP2-AS1:1
5.1 lnc-NUCKS1-21:1
5.2 lnc-FAM72A-7:1