Transcript: lnc-FAM20C-6:2

Basic information

LNCipedia transcript ID: lnc-FAM20C-6:2 
LNCipedia gene ID: lnc-FAM20C-6
RefSeq ID: NR_033960
Location (hg38): chr7:379425-382879
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2247 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00012842; NONHSAT118631; NR_033960; NR_033960.1
Alternative gene names: XLOC_005956; linc-HEATR2-4; LOC442497


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.64 non-coding 
CPAT coding probability 7.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM20C-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM20C-6:2
3.1 lnc-FAM20C-6:2
4.0 lnc-FAM20C-6:2
4.1 lnc-FAM20C-6:2
5.0 lnc-FAM20C-6:2
5.1 lnc-GPER1-34:2
5.2 lnc-FAM20C-6:2