Transcript: lnc-FAM20C-3:6

Basic information

LNCipedia transcript ID: lnc-FAM20C-3:6 
LNCipedia gene ID: lnc-FAM20C-3
Ensembl Gene ID: ENSG00000240859
Ensembl Transcript ID: ENST00000471299
Location (hg38): chr7:149778-153938
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 885 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000471299; ENST00000471299.1; AC093627.10-003; OTTHUMT00000322471.1
Alternative gene names: ENSG00000240859; AC093627.10; ENSG00000240859.1; OTTHUMG00000151398.1; AC093627.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 36.3923 non-coding 
CPAT coding probability 8.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM20C-3:6 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM20C-3:6
3.1 lnc-FAM20C-3:6
4.0 lnc-FAM20C-3:6
4.1 lnc-FAM20C-3:6
5.0 lnc-FAM20C-3:6
5.1 lnc-GPER1-44:24
5.2 lnc-FAM20C-3:6