Transcript: lnc-FAM20C-3:4

Basic information

LNCipedia transcript ID: lnc-FAM20C-3:4 
LNCipedia gene ID: lnc-FAM20C-3
Ensembl Gene ID: ENSG00000240859
Ensembl Transcript ID: ENST00000479592
Location (hg38): chr7:149731-153490
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 591 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000479592; TCONS_00012932; ENST00000479592.1; AC093627.10-002; OTTHUMT00000322470.1; NONHSAT118603
Alternative gene names: ENSG00000240859; XLOC_005953; linc-FAM20C-2; AC093627.10; ENSG00000240859.1; OTTHUMG00000151398.1; AC093627.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 36.3923 non-coding 
CPAT coding probability 4.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM20C-3:4 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM20C-3:4
3.1 lnc-FAM20C-3:4
4.0 lnc-FAM20C-3:4
4.1 lnc-FAM20C-3:4
5.0 lnc-FAM20C-3:4
5.1 lnc-GPER1-44:17
5.2 lnc-FAM20C-3:4