Transcript: lnc-FAM174B-3:3

Basic information

LNCipedia transcript ID: lnc-FAM174B-3:3 
LNCipedia gene ID: lnc-FAM174B-3
Ensembl Gene ID: ENSG00000259170
Ensembl Transcript ID: ENST00000554440
RefSeq ID: NR_126501
Location (hg38): chr15:92470233-92471546
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000554440.1; RP11-763K15.1-001; OTTHUMT00000414926.1; NR_126501.1
Alternative gene names: ENSG00000259170.1; RP11-763K15.1; OTTHUMG00000171741.1; AC090985.1; LOC104613533


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.922 non-coding 
CPAT coding probability 4.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM174B-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM174B-3:3
4.0 lnc-FAM174B-3:3
4.1 lnc-FAM174B-3:3
5.0 lnc-FAM174B-3:3
5.1 lnc-CIB1-29:5
5.2 lnc-FAM174B-3:3