Transcript: lnc-FAM172A-7:3

Basic information

LNCipedia transcript ID: lnc-FAM172A-7:3 
LNCipedia gene ID: lnc-FAM172A-7
Ensembl Gene ID: ENSG00000249776
Ensembl Transcript ID: ENST00000512284
Location (hg38): chr5:92553443-92560033
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 264 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009727; ENST00000512284; ENST00000512284.1; RP11-133F8.2-001; OTTHUMT00000370021.1; NONHSAT102775
Alternative gene names: XLOC_004925; linc-ARRDC3-1; ENSG00000249776; RP11-133F8.2; ENSG00000249776.1; OTTHUMG00000162673.1; ENSG00000249776.5; AC124854.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM172A-7:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM172A-7:3
3.1 lnc-FAM172A-7:3
4.0 lnc-FAM172A-7:3
4.1 lnc-FAM172A-7:3
5.0 lnc-FAM172A-7:3
5.1 lnc-ANKRD34B-178:9
5.2 lnc-FAM172A-7:3