Transcript: lnc-FAM167A-2:5

Basic information

LNCipedia transcript ID: lnc-FAM167A-2:5 
LNCipedia gene ID: lnc-FAM167A-2
Location (hg38): chr8:11552488-11552991
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 504 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT125064; ENST00000602626.1
Alternative gene names: ENSG00000269954.1; RP11-148O21.6; AC022239.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.0682 non-coding 
CPAT coding probability 4.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM167A-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-148O21.3.1-2:1
4.0 lnc-RP11-148O21.3.1-2:1
4.1 lnc-RP11-148O21.3.1-2:1
5.0 lnc-RP11-148O21.3.1-2:1
5.1 lnc-PINX1-25:5
5.2 lnc-FAM167A-2:5