Transcript: lnc-FAM162A-2:4

Basic information

LNCipedia transcript ID: lnc-FAM162A-2:4 
LNCipedia gene ID: lnc-FAM162A-2
Ensembl Gene ID: ENSG00000272758
Ensembl Transcript ID: ENST00000608346
Location (hg38): chr3:122416219-122433262
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 564 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608346.1
Alternative gene names: ENSG00000272758.1; RP11-299J3.8; ENSG00000272758.5; AC083798.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.6625 non-coding 
CPAT coding probability 4.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM162A-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM162A-2:4
4.0 lnc-FAM162A-2:4
4.1 lnc-FAM162A-2:4
5.0 lnc-FAM162A-2:4
5.1 lnc-DTX3L-5:15
5.2 lnc-FAM162A-2:4