Transcript: lnc-FAM153A-2:1

Basic information

LNCipedia transcript ID: lnc-FAM153A-2:1 
LNCipedia gene ID: lnc-FAM153A-2
Ensembl Gene ID: ENSG00000249186
Ensembl Transcript ID: ENST00000504362
Location (hg38): chr5:177864393-177871194
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504362.1; RP11-423H2.5-001; OTTHUMT00000373574.1; NONHSAT105475
Alternative gene names: ENSG00000249186.1; RP11-423H2.5; OTTHUMG00000163461.1; AC140125.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.9491 non-coding 
CPAT coding probability 9.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM153A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM153A-2:1
4.0 lnc-FAM153A-2:1
4.1 lnc-FAM153A-2:1
5.0 lnc-FAM153A-2:1
5.1 lnc-PDLIM7-22:1
5.2 lnc-FAM153A-2:1