Transcript: lnc-FAM110B-5:2

Basic information

LNCipedia transcript ID: lnc-FAM110B-5:2 
LNCipedia gene ID: lnc-FAM110B-5
Ensembl Gene ID: ENSG00000253871
Ensembl Transcript ID: ENST00000521446
Location (hg38): chr8:57343807-57346843
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 569 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521446; ENST00000521446.1; RP11-756K15.2-002; OTTHUMT00000378042.1; NONHSAT126749; FPKM1_group_31367_transcript_2
Alternative gene names: ENSG00000253871; RP11-756K15.2; ENSG00000253871.1; OTTHUMG00000164271.1; AC068075.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.3618 non-coding 
CPAT coding probability 4.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM110B-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM110B-5:2
3.1 lnc-FAM110B-5:2
4.0 lnc-FAM110B-5:2
4.1 lnc-FAM110B-5:2
5.0 lnc-FAM110B-5:2
5.1 lnc-SDCBP-19:3
5.2 lnc-FAM110B-5:2