Transcript: lnc-FABP5-6:1

Basic information

LNCipedia transcript ID: lnc-FABP5-6:1 
LNCipedia gene ID: lnc-FABP5-6
Location (hg38): chr8:80893954-80952319
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1789 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000501214; TCONS_00014542; NONHSAT127433
Alternative gene names: ENSG00000244833; XLOC_006857; linc-FABP5-2; AC012533.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.0661 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FABP5-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FABP5-5:1
3.1 lnc-FABP5-5:1
4.0 lnc-FABP5-6:1
4.1 lnc-FABP5-6:1
5.0 lnc-FABP5-6:1
5.1 lnc-CA2-48:1
5.2 lnc-FABP5-6:1