Transcript: lnc-EXOSC9-48:1

Basic information

LNCipedia transcript ID: lnc-EXOSC9-48:1 
LNCipedia gene ID: lnc-EXOSC9-48
Location (hg38): chr4:121489989-121514938
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 568 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008214; NONHSAT098143
Alternative gene names: XLOC_003675; linc-EXOSC9-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.5172 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EXOSC9-48:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC079341.1-1:1
3.1 lnc-AC079341.1-1:1
4.0 lnc-AC079341.1-1:1
4.1 lnc-AC079341.1-1:1
5.0 lnc-AC079341.1-1:1
5.1 lnc-EXOSC9-2:1
5.2 lnc-EXOSC9-48:1