Transcript: lnc-EXOSC6-3:20

Basic information

LNCipedia transcript ID: lnc-EXOSC6-3:20 
LNCipedia gene ID: lnc-EXOSC6-3
Ensembl Gene ID: ENSG00000196696
Ensembl Transcript ID: ENST00000531894
Location (hg38): chr16:69976297-70065948
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4184 bp
Exons: 26
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531894.1; PDXDC2P-001; OTTHUMT00000395258.1; ENST00000531894.5
Alternative gene names: ENSG00000196696.7; PDXDC2P; OTTHUMG00000167593.2; ENSG00000196696.8; ENSG00000196696.12; PDXDC2P-NPIPB14P; AC009022.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2836.8058 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EXOSC6-3:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EXOSC6-3:1
4.0 lnc-RP11-419C5.2.1-3:1
4.1 lnc-RP11-419C5.2.1-3:1
5.0 lnc-RP11-419C5.2.1-3:1
5.1 lnc-NOB1-5:9
5.2 lnc-EXOSC6-3:20