Transcript: lnc-EVX1-17:1

Basic information

LNCipedia transcript ID: lnc-EVX1-17:1 
LNCipedia gene ID: lnc-EVX1-17
Ensembl Gene ID: ENSG00000270182
Ensembl Transcript ID: ENST00000602610
Location (hg38): chr7:27158344-27158976
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 633 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT119690; ENST00000602610.1
Alternative gene names: ENSG00000270182.1; RP1-170O19.21; RP1-170O19.24; AC004080.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.6602 non-coding 
CPAT coding probability 18.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EVX1-17:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EVX1-17:1
4.0 lnc-EVX1-17:1
4.1 lnc-EVX1-17:1
5.0 lnc-EVX1-17:1
5.1 lnc-SNX10-25:2
5.2 lnc-EVX1-17:1