Transcript: lnc-ETS2-1:1

Basic information

LNCipedia transcript ID: lnc-ETS2-1:1 
LNCipedia gene ID: lnc-ETS2-1
Ensembl Gene ID: ENSG00000229986
Ensembl Transcript ID: ENST00000416842
Location (hg38): chr21:38846247-38848644
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 487 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028847; ENST00000416842; ENST00000416842.1; AP001042.1-001; OTTHUMT00000194935.1; NONHSAT082123
Alternative gene names: XLOC_013938; linc-WRB-6; ENSG00000229986; AP001042.1; ENSG00000229986.1; OTTHUMG00000086700.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.2073 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ETS2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ETS2-1:1
3.1 lnc-ETS2-1:1
4.0 lnc-ETS2-1:1
4.1 lnc-ETS2-1:1
5.0 lnc-ETS2-1:1
5.1 lnc-SIM2-56:1
5.2 lnc-ETS2-1:1