Transcript: lnc-ESRP1-2:1

Basic information

LNCipedia transcript ID: lnc-ESRP1-2:1 
LNCipedia gene ID: lnc-ESRP1-2
Ensembl Gene ID: ENSG00000253704
Ensembl Transcript ID: ENST00000523011
Location (hg38): chr8:94553722-94569745
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1789 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523011.1; RP11-267M23.4-001; OTTHUMT00000378866.1; NONHSAT127776
Alternative gene names: ENSG00000253704.1; RP11-267M23.4; OTTHUMG00000164453.1; AC023632.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.351 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ESRP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC023632.1-2:1
4.0 lnc-AC023632.1-2:1
4.1 lnc-AC023632.1-2:1
5.0 lnc-AC023632.1-2:1
5.1 lnc-CA2-102:1
5.2 lnc-ESRP1-2:1