Transcript: lnc-ESR2-1:2

Basic information

LNCipedia transcript ID: lnc-ESR2-1:2 
LNCipedia gene ID: lnc-ESR2-1
Ensembl Gene ID: ENSG00000214770
Ensembl Transcript ID: ENST00000555861
Location (hg38): chr14:64329431-64336569
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1751 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555861.1; RP11-544I20.2-002; OTTHUMT00000412164.1; NONHSAT037326
Alternative gene names: ENSG00000214770.2; RP11-544I20.2; OTTHUMG00000171182.1; AL161756.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.5712 non-coding 
CPAT coding probability 18.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ESR2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ESR2-1:2
4.0 lnc-ESR2-1:2
4.1 lnc-ESR2-1:2
5.0 lnc-ESR2-1:2
5.1 lnc-DHRS7-41:2
5.2 lnc-ESR2-1:2