Transcript: lnc-ERICH1-80:2

Basic information

LNCipedia transcript ID: lnc-ERICH1-80:2 
LNCipedia gene ID: lnc-ERICH1-80
Ensembl Gene ID: ENSG00000275427
Ensembl Transcript ID: ENST00000617093
RefSeq ID: NR_111948
Location (hg38): chr8:1296034-1302607
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3049 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000617093.1; NR_111948.1
Alternative gene names: ENSG00000275427.1; CTD-2281E23.1; AF067845.2; LOC286083


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.165 non-coding 
CPAT coding probability 27.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERICH1-80:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-DEFA1B-80:2
5.1 lnc-DEFA1B-80:2
5.2 lnc-ERICH1-80:2