Transcript: lnc-ERICH1-19:8

Basic information

LNCipedia transcript ID: lnc-ERICH1-19:8 
LNCipedia gene ID: lnc-ERICH1-19
Ensembl Gene ID: ENSG00000253982
Ensembl Transcript ID: ENST00000518481
Location (hg38): chr8:1762625-1763297
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 579 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518481.1; CTD-2336O2.1-003; OTTHUMT00000374588.1
Alternative gene names: ENSG00000253982.1; CTD-2336O2.1; OTTHUMG00000163625.1; AC100810.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.0785 non-coding 
CPAT coding probability 2.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERICH1-19:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERICH1-7:3
4.0 lnc-ERICH1-19:8
4.1 lnc-ERICH1-19:8
5.0 lnc-ERICH1-19:8
5.1 lnc-DEFA1B-72:18
5.2 lnc-ERICH1-19:8