Transcript: lnc-ERCC5-1:1

Basic information

LNCipedia transcript ID: lnc-ERCC5-1:1 
LNCipedia gene ID: lnc-ERCC5-1
Location (hg38): chr13:102879936-102881167
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 361 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000416924; ENST00000416924.1; RP11-484I6.6-001; OTTHUMT00000045702.1; NONHSAT035022
Alternative gene names: ENSG00000165366; RP11-484I6.6; ENSG00000165366.8; OTTHUMG00000017308.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.8671 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERCC5-1:1 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERCC5-1:1
3.1 lnc-ERCC5-1:1
4.0 lnc-ERCC5-1:1
4.1 lnc-ERCC5-1:1
5.0 lnc-ERCC5-1:1
5.1 lnc-COL4A2-58:1
5.2 lnc-ERCC5-1:1