Transcript: lnc-EQTN-1:1

Basic information

LNCipedia transcript ID: lnc-EQTN-1:1 
LNCipedia gene ID: lnc-EQTN-1
RefSeq ID: NR_026679
Location (hg38): chr9:27245684-27282793
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2913 bp
Exons: 17
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000425633; ENST00000425633.1; LINC00032-001; OTTHUMT00000051963.1; NONHSAT130612; NR_026679; NR_026679.1
Alternative gene names: ENSG00000231459; NCRNA00032; ENSG00000231459.1; LINC00032; OTTHUMG00000019711.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.0428 non-coding 
CPAT coding probability 15.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EQTN-1:1 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf11-1:1
3.1 lnc-C9orf11-1:1
4.0 LINC00032:1
4.1 LINC00032:1
5.0 LINC00032:1
5.1 lnc-CD72-101:1
5.2 lnc-EQTN-1:1