Transcript: lnc-EPN2-3:1

Basic information

LNCipedia transcript ID: lnc-EPN2-3:1 
LNCipedia gene ID: lnc-EPN2-3
Location (hg38): chr17:19188016-19188714
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 699 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000584923.1; SNORD3A-001; OTTHUMT00000442027.2; NONHSAT146441
Alternative gene names: ENSG00000263934.1; SNORD3A; OTTHUMG00000178445.2; ENSG00000263934.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 76.3025 coding 
CPAT coding probability 5.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EPN2-3:1 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC106017.1.1-2:1
4.0 lnc-AC106017.1.1-2:1
4.1 lnc-AC106017.1.1-2:1
5.0 lnc-AC106017.1.1-2:1
5.1 lnc-GLP2R-150:1
5.2 lnc-EPN2-3:1