Transcript: lnc-EPHA1-1:1

Basic information

LNCipedia transcript ID: lnc-EPHA1-1:1 
LNCipedia gene ID: lnc-EPHA1-1
Ensembl Gene ID: ENSG00000232533
Ensembl Transcript ID: ENST00000429630
Location (hg38): chr7:143379692-143380495
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 648 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429630.1; AC093673.5-001; OTTHUMT00000327419.1
Alternative gene names: ENSG00000232533.1; AC093673.5; OTTHUMG00000152694.1; AC093673.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -203.2075 non-coding 
CPAT coding probability 5.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPHA1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EPHA1-1:1
4.0 lnc-EPHA1-1:1
4.1 lnc-EPHA1-1:1
5.0 lnc-EPHA1-1:1
5.1 lnc-PRSS58-12:4
5.2 lnc-EPHA1-1:1