Transcript: lnc-ELF2-2:4

Basic information

LNCipedia transcript ID: lnc-ELF2-2:4 
LNCipedia gene ID: lnc-ELF2-2
Ensembl Gene ID: ENSG00000250195
Ensembl Transcript ID: ENST00000505607
Location (hg38): chr4:138819954-138821465
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 200 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505607.1; RP11-371F15.3-003; OTTHUMT00000366074.1
Alternative gene names: ENSG00000250195.1; RP11-371F15.3; OTTHUMG00000161774.1; AC109927.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.0407 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ELF2-2:4 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ELF2-2:4
4.0 lnc-ELF2-2:4
4.1 lnc-ELF2-2:4
5.0 lnc-ELF2-2:4
5.1 lnc-CLGN-28:4
5.2 lnc-ELF2-2:4