Transcript: lnc-ELF2-2:3

Basic information

LNCipedia transcript ID: lnc-ELF2-2:3 
LNCipedia gene ID: lnc-ELF2-2
Ensembl Gene ID: ENSG00000250195
Ensembl Transcript ID: ENST00000507038
Location (hg38): chr4:138819960-138937981
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 421 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007857; ENST00000507038.1; RP11-371F15.3-002; OTTHUMT00000366073.1; NONHSAT098445
Alternative gene names: XLOC_004096; linc-SLC7A11-4; ENSG00000250195.1; RP11-371F15.3; OTTHUMG00000161774.1; AC109927.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.3771 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ELF2-2:3 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ELF2-2:3
3.1 lnc-ELF2-2:3
4.0 lnc-ELF2-2:3
4.1 lnc-ELF2-2:3
5.0 lnc-ELF2-2:3
5.1 lnc-CLGN-28:3
5.2 lnc-ELF2-2:3