Transcript: lnc-EIPR1-4:1

Basic information

LNCipedia transcript ID: lnc-EIPR1-4:1 
LNCipedia gene ID: lnc-EIPR1-4
Ensembl Gene ID: ENSG00000228391
Ensembl Transcript ID: ENST00000437610
Location (hg38): chr2:2870558-2871231
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003154; ENST00000437610; ENST00000437610.1; AC011995.3-001; OTTHUMT00000322598.1; NONHSAT068686
Alternative gene names: XLOC_001947; linc-MYT1L-8; ENSG00000228391; AC011995.3; ENSG00000228391.1; OTTHUMG00000151428.1; AC011995.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.3493 non-coding 
CPAT coding probability 3.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIPR1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSSC1-4:1
3.1 lnc-TSSC1-4:1
4.0 lnc-TSSC1-4:1
4.1 lnc-TSSC1-4:1
5.0 lnc-TSSC1-4:1
5.1 lnc-RAD51AP2-190:1
5.2 lnc-EIPR1-4:1