Transcript: lnc-EIF2S2-1:2

Basic information

LNCipedia transcript ID: lnc-EIF2S2-1:2 
LNCipedia gene ID: lnc-EIF2S2-1
Ensembl Gene ID: ENSG00000228386
Ensembl Transcript ID: ENST00000451556
Location (hg38): chr20:34014969-34017749
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 603 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT079422; ENST00000451556.2
Alternative gene names: ENSG00000228386.2; RP5-1125A11.4; AL031668.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.8804 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIF2S2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF2S2-1:2
4.0 lnc-EIF2S2-1:2
4.1 lnc-EIF2S2-1:2
5.0 lnc-EIF2S2-1:2
5.1 lnc-MMP24OS-28:2
5.2 lnc-EIF2S2-1:2