Transcript: lnc-EIF2B1-1:1

Basic information

LNCipedia transcript ID: lnc-EIF2B1-1:1 
LNCipedia gene ID: lnc-EIF2B1-1
Location (hg38): chr12:123582220-123585115
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1950 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000498967; ENST00000498967.2; RP11-486O12.2-001; OTTHUMT00000400605.1
Alternative gene names: ENSG00000247373; RP11-486O12.2; ENSG00000247373.2; OTTHUMG00000168693.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 139.1523 coding 
CPAT coding probability 70.14% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EIF2B1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2B1-1:1
3.1 lnc-EIF2B1-1:1
4.0 lnc-EIF2B1-1:1
4.1 lnc-EIF2B1-1:1
5.0 lnc-EIF2B1-1:1
5.1 lnc-SBNO1-11:1
5.2 lnc-EIF2B1-1:1