Transcript: lnc-EFR3A-6:1

Basic information

LNCipedia transcript ID: lnc-EFR3A-6:1 
LNCipedia gene ID: lnc-EFR3A-6
Ensembl Gene ID: ENSG00000254317
Ensembl Transcript ID: ENST00000524100
Location (hg38): chr8:129832301-129844504
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 917 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524100.1; RP11-473O4.5-001; OTTHUMT00000380588.1; NONHSAT129133
Alternative gene names: ENSG00000254317.1; RP11-473O4.5; OTTHUMG00000164852.1; AC022973.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.6651 non-coding 
CPAT coding probability 22.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFR3A-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EFR3A-6:1
4.0 lnc-EFR3A-6:1
4.1 lnc-EFR3A-6:1
5.0 lnc-EFR3A-6:1
5.1 lnc-MYC-24:1
5.2 lnc-EFR3A-6:1