Transcript: lnc-EFEMP1-3:3

Basic information

LNCipedia transcript ID: lnc-EFEMP1-3:3 
LNCipedia gene ID: lnc-EFEMP1-3
RefSeq ID: NR_125368
Location (hg38): chr2:56173534-56185770
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2863 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT070821; NR_125368; NR_125368.1
Alternative gene names: LOC100129434


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.4049 non-coding 
CPAT coding probability 17.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFEMP1-3:3 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EFEMP1-3:3
4.0 lnc-EFEMP1-3:3
4.1 lnc-EFEMP1-3:3
5.0 lnc-EFEMP1-3:3
5.1 lnc-PPP4R3B-18:7
5.2 lnc-EFEMP1-3:3