Transcript: lnc-EFCAB8-1:4

Basic information

LNCipedia transcript ID: lnc-EFCAB8-1:4 
LNCipedia gene ID: lnc-EFCAB8-1
Ensembl Gene ID: ENSG00000260257
Ensembl Transcript ID: ENST00000569087
Location (hg38): chr20:32856621-32858751
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2131 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569087.2
Alternative gene names: ENSG00000260257.2; RP5-1085F17.3; AL035071.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -34.7265 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFCAB8-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-EFCAB8-1:4
4.1 lnc-EFCAB8-1:4
5.0 lnc-EFCAB8-1:4
5.1 lnc-BPIFB2-2:3
5.2 lnc-EFCAB8-1:4