Transcript: lnc-ECI2-2:11

Basic information

LNCipedia transcript ID: lnc-ECI2-2:11 
LNCipedia gene ID: lnc-ECI2-2
Ensembl Gene ID: ENSG00000231811
Ensembl Transcript ID: ENST00000437430
Location (hg38): chr6:4345743-4347037
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 329 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147379; ENST00000437430.2
Alternative gene names: ENSG00000231811.2; RP3-527G5.1; AL159166.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -266.3982 non-coding 
CPAT coding probability 8.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ECI2-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ECI2-2:11
4.0 lnc-ECI2-2:11
4.1 lnc-ECI2-2:11
5.0 lnc-ECI2-2:11
5.1 lnc-ECI2-17:17
5.2 lnc-ECI2-2:11