Transcript: lnc-EBF1-2:1

Basic information

LNCipedia transcript ID: lnc-EBF1-2:1 
LNCipedia gene ID: lnc-EBF1-2
Location (hg38): chr5:158470823-158478354
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 246 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010536; NONHSAT104798
Alternative gene names: XLOC_005062; linc-CLINT1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.6093 non-coding 
CPAT coding probability 2.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EBF1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EBF1-2:1
3.1 lnc-EBF1-2:1
4.0 lnc-EBF1-2:1
4.1 lnc-EBF1-2:1
5.0 lnc-EBF1-2:1
5.1 lnc-FAM71B-19:1
5.2 lnc-EBF1-2:1