Transcript: lnc-EBAG9-2:2

Basic information

LNCipedia transcript ID: lnc-EBAG9-2:2 
LNCipedia gene ID: lnc-EBAG9-2
Ensembl Gene ID: ENSG00000253122
Ensembl Transcript ID: ENST00000523264
Location (hg38): chr8:110609241-110632394
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 202 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523264; ENST00000523264.1; RP11-238I10.1-001; OTTHUMT00000380899.1; NONHSAT128310
Alternative gene names: ENSG00000253122; RP11-238I10.1; ENSG00000253122.1; OTTHUMG00000164915.1; AC025366.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EBAG9-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-422N16.3.1-1:1
3.1 lnc-RP11-422N16.3.1-2:1
4.0 lnc-RP11-422N16.3.1-2:1
4.1 lnc-RP11-422N16.3.1-2:1
5.0 lnc-RP11-422N16.3.1-2:1
5.1 lnc-COLEC10-35:2
5.2 lnc-EBAG9-2:2