Transcript: lnc-DZANK1-1:2

Basic information

LNCipedia transcript ID: lnc-DZANK1-1:2 
LNCipedia gene ID: lnc-DZANK1-1
Ensembl Gene ID: ENSG00000230010
Ensembl Transcript ID: ENST00000412241
Location (hg38): chr20:18323655-18359259
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412241; ENST00000412241.1; RP4-568F9.6-002; OTTHUMT00000127627.1; NONHSAT078818
Alternative gene names: ENSG00000230010; RP4-568F9.6; ENSG00000230010.1; OTTHUMG00000057435.1; AL049646.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.1754 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DZANK1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DZANK1-1:2
3.1 lnc-DZANK1-1:2
4.0 lnc-DZANK1-1:2
4.1 lnc-DZANK1-1:2
5.0 lnc-DZANK1-1:2
5.1 lnc-RRBP1-21:2
5.2 lnc-DZANK1-1:2