Transcript: lnc-DUSP22-3:1

Basic information

LNCipedia transcript ID: lnc-DUSP22-3:1 
LNCipedia gene ID: lnc-DUSP22-3
Location (hg38): chr6:224950-226400
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 844 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011250; ENST00000441203; ENST00000441203.1; RP3-416J7.2-001; OTTHUMT00000039618.1; NONHSAT105984
Alternative gene names: XLOC_005118; linc-DUSP22-2; ENSG00000224179; RP3-416J7.2; ENSG00000224179.1; OTTHUMG00000014110.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.8153 non-coding 
CPAT coding probability 26.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DUSP22-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL035696.1-2:1
3.1 lnc-AL035696.1-3:1
4.0 lnc-AL035696.1-3:1
4.1 lnc-AL035696.1-3:1
5.0 lnc-AL035696.1-3:1
5.1 lnc-RIPK1-149:1
5.2 lnc-DUSP22-3:1