Transcript: lnc-DTWD2-2:1

Basic information

LNCipedia transcript ID: lnc-DTWD2-2:1 
LNCipedia gene ID: lnc-DTWD2-2
Ensembl Gene ID: ENSG00000249426
Ensembl Transcript ID: ENST00000515364
Location (hg38): chr5:118760474-118785459
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009761; ENST00000515364; ENST00000515364.1; CTC-448D22.1-001; OTTHUMT00000371177.1; NONHSAT103408
Alternative gene names: XLOC_004966; linc-SEMA6A-4; ENSG00000249426; CTC-448D22.1; ENSG00000249426.1; OTTHUMG00000162962.1; AC093206.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.9696 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTWD2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DTWD2-1:1
3.1 lnc-DTWD2-2:1
4.0 lnc-DTWD2-2:1
4.1 lnc-DTWD2-2:1
5.0 lnc-DTWD2-2:1
5.1 lnc-LOX-48:1
5.2 lnc-DTWD2-2:1