Transcript: lnc-DTHD1-1:2

Basic information

LNCipedia transcript ID: lnc-DTHD1-1:2 
LNCipedia gene ID: lnc-DTHD1-1
Ensembl Gene ID: ENSG00000247193
Ensembl Transcript ID: ENST00000502245
Location (hg38): chr4:36256518-36273940
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1043 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502245; ENST00000502245.1; RP11-431M7.3-002; OTTHUMT00000360382.1; NONHSAT096001
Alternative gene names: ENSG00000247193; RP11-431M7.3; ENSG00000247193.2; OTTHUMG00000160372.1; AC104078.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -194.0579 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTHD1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DTHD1-1:2
3.1 lnc-DTHD1-1:2
4.0 lnc-DTHD1-1:2
4.1 lnc-DTHD1-1:2
5.0 lnc-DTHD1-1:2
5.1 lnc-GABRB1-89:7
5.2 lnc-DTHD1-1:2