Transcript: lnc-DSCAML1-1:4

Basic information

LNCipedia transcript ID: lnc-DSCAML1-1:4 
LNCipedia gene ID: lnc-DSCAML1-1
Location (hg38): chr11:117800844-117819419
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2872 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000514385; ENST00000514385.1; RP11-728F11.1-001; OTTHUMT00000390047.1; NONHSAT024413
Alternative gene names: ENSG00000251594; ENSG00000251594.1; RP11-728F11.1; OTTHUMG00000166495.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.4879 non-coding 
CPAT coding probability 7.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DSCAML1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FXYD2-1:1
3.1 lnc-FXYD2-1:1
4.0 lnc-DSCAML1-1:4
4.1 lnc-DSCAML1-1:4
5.0 lnc-DSCAML1-1:4
5.1 lnc-SCN4B-22:1
5.2 lnc-DSCAML1-1:4