Transcript: lnc-DNASE1L1-1:1

Basic information

LNCipedia transcript ID: lnc-DNASE1L1-1:1 
LNCipedia gene ID: lnc-DNASE1L1-1
Ensembl Gene ID: ENSG00000280195
Ensembl Transcript ID: ENST00000624054
Location (hg38): chrX:154396878-154398816
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1939 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT139157; ENST00000624054.1
Alternative gene names: ENSG00000280195.1; XX-FW83563B9.5; AC245140.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.1532 non-coding 
CPAT coding probability 30.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DNASE1L1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DNASE1L1-1:1
4.0 lnc-DNASE1L1-1:1
4.1 lnc-DNASE1L1-1:1
5.0 lnc-DNASE1L1-1:1
5.1 lnc-CTAG1B-10:1
5.2 lnc-DNASE1L1-1:1