Transcript: lnc-DNAJC7-3:1

Basic information

LNCipedia transcript ID: lnc-DNAJC7-3:1 
LNCipedia gene ID: lnc-DNAJC7-3
Location (hg38): chr17:42040713-42043117
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 761 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000587304.1
Alternative gene names: ENSG00000267221.1; CTD-2132N18.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -403.7589 non-coding 
CPAT coding probability 99.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DNAJC7-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DNAJC7-3:1
4.0 lnc-DNAJC7-3:1
4.1 lnc-DNAJC7-3:1
5.0 lnc-DNAJC7-3:1
5.1 lnc-BRCA1-36:1
5.2 lnc-DNAJC7-3:1