Transcript: lnc-DNAAF5-1:15

Basic information

LNCipedia transcript ID: lnc-DNAAF5-1:15 
LNCipedia gene ID: lnc-DNAAF5-1
Ensembl Gene ID: ENSG00000237181
Ensembl Transcript ID: ENST00000429872
Location (hg38): chr7:603185-608482
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 731 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429872.1; AC147651.4-001; OTTHUMT00000322540.1; NONHSAT118649
Alternative gene names: ENSG00000237181.1; AC147651.4; OTTHUMG00000151414.1; AC147651.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.2187 non-coding 
CPAT coding probability 38.84% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DNAAF5-1:15 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HEATR2-1:1
4.0 lnc-HEATR2-1:1
4.1 lnc-HEATR2-1:1
5.0 lnc-HEATR2-1:1
5.1 lnc-GPER1-24:20
5.2 lnc-DNAAF5-1:15