Transcript: lnc-DMXL2-1:1

Basic information

LNCipedia transcript ID: lnc-DMXL2-1:1 
LNCipedia gene ID: lnc-DMXL2-1
Ensembl Gene ID: ENSG00000259701
Ensembl Transcript ID: ENST00000560011
Location (hg38): chr15:51278927-51280015
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 363 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560011.1; RP11-108K3.3-001; OTTHUMT00000418751.1; NONHSAT042638
Alternative gene names: ENSG00000259701.1; RP11-108K3.3; OTTHUMG00000172484.1; AC020891.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -382.794 non-coding 
CPAT coding probability 5.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DMXL2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DMXL2-1:1
4.0 lnc-DMXL2-1:1
4.1 lnc-DMXL2-1:1
5.0 lnc-DMXL2-1:1
5.1 lnc-DNAAF4-80:1
5.2 lnc-DMXL2-1:1