Transcript: lnc-DMRTA1-4:2

Basic information

LNCipedia transcript ID: lnc-DMRTA1-4:2 
LNCipedia gene ID: lnc-DMRTA1-4
Ensembl Gene ID: ENSG00000231460
Ensembl Transcript ID: ENST00000423440
Location (hg38): chr9:23829670-23849914
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1430 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT130480; ENST00000423440.2
Alternative gene names: ENSG00000231460.2; RP11-321L2.1; AL365204.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.1441 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DMRTA1-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DMRTA1-4:2
4.0 lnc-DMRTA1-4:2
4.1 lnc-DMRTA1-4:2
5.0 lnc-DMRTA1-4:2
5.1 lnc-RECK-116:1
5.2 lnc-DMRTA1-4:2