Transcript: lnc-DMRTA1-3:1

Basic information

LNCipedia transcript ID: lnc-DMRTA1-3:1 
LNCipedia gene ID: lnc-DMRTA1-3
Location (hg38): chr9:23693630-23721791
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1306 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000457037.1; RP11-315I14.3-001; OTTHUMT00000051941.1; NONHSAT130474
Alternative gene names: ENSG00000230810.1; RP11-315I14.3; OTTHUMG00000019698.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.0664 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DMRTA1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DMRTA1-3:1
4.0 lnc-DMRTA1-3:1
4.1 lnc-DMRTA1-3:1
5.0 lnc-DMRTA1-3:1
5.1 lnc-RECK-118:1
5.2 lnc-DMRTA1-3:1