Transcript: lnc-DLX2-4:3

Basic information

LNCipedia transcript ID: lnc-DLX2-4:3 
LNCipedia gene ID: lnc-DLX2-4
Ensembl Gene ID: ENSG00000225205
Ensembl Transcript ID: ENST00000444919
Location (hg38): chr2:172552615-172556408
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 414 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444919.1; AC093818.1-005; OTTHUMT00000333910.1; NONHSAT075513
Alternative gene names: ENSG00000225205.1; AC093818.1; OTTHUMG00000154088.3; ENSG00000225205.5; AC078883.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.6638 non-coding 
CPAT coding probability 10.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-DLX2-4:3 yes no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DLX2-4:3
4.0 lnc-DLX2-4:3
4.1 lnc-DLX2-4:3
5.0 lnc-DLX2-4:3
5.1 lnc-OLA1-31:12
5.2 lnc-DLX2-4:3